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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
degA_2Bacterial regulatory s, lacI family protein. (333 aa)    
Predicted Functional Partners:
ptsP-3
PTS_I_fam: phosphoenolpyruvate-protein phosphotransferase.
 
 
 
 0.949
lacC
1-PFK: hexose kinase, 1-phosphofructokinase family protein; Belongs to the carbohydrate kinase PfkB family.
 
 
 
 0.890
ptsP-2
PTS_I_fam: phosphoenolpyruvate-protein phosphotransferase; Belongs to the PEP-utilizing enzyme family.
 
 
 
 0.871
gltB_2
Glutamine amidotransferases class-II family protein.
    
 
 0.807
fruA
PTS system fructose-specific EIIBC component.
 
   
 0.780
lgrD_1
NRPS-para261: non-ribosomal peptide synthase TIGR01720 domain protein.
    
 
 0.698
tycC_2
AA-adenyl-dom: amino acid adenylation domain protein.
    
 
 0.698
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
  
 
   0.585
ptsH
PTS_HPr_: phosphocarrier, HPr family protein.
 
 
 
 0.519
rbsK
Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
  
 0.468
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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