STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ypmQ_3Redoxin family protein. (211 aa)    
Predicted Functional Partners:
DM82_562
Cytochrome c family protein.
 
  
 0.847
resA
ahpC/TSA family protein.
 
 
 0.754
cbaB_1
Cytochrome C oxidase subunit II, periplasmic domain protein.
 
 
 0.662
tlpA
ahpC/TSA family protein.
  
 
 0.623
cbaB_2
Cytochrome C oxidase subunit II, periplasmic domain protein.
 
 
 0.597
coxB
Cytochrome c oxidase, subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
  
 
 0.570
ctaG
Cytochrome c oxidase assembly CtaG/Cox11 family protein.
  
 
 0.534
DM82_3676
Cytochrome oxidase assembly family protein.
  
 
 0.531
nirK
Cu_nitrite_red: nitrite reductase, copper-containing; Belongs to the multicopper oxidase family.
 
  
 0.515
DM82_2190
Hypothetical protein.
 
 
 0.494
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.