Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
DM82_5621Xylose isomerase-like TIM barrel family protein. (266 aa)    
Predicted Functional Partners:
DM82_5622
3-dehydroquinate synthase family protein.
     
 0.789
DM82_5620
Radical SAM superfamily protein.
       0.631
stsC
L-glutamine:scyllo-inosose aminotransferase.
       0.615
DM82_5618
FAD-NAD(P)-binding family protein.
       0.592
DM82_5619
OB-fold nucleic acid binding domain protein.
       0.592
iolB
kduI/IolB family protein.
  
  
 0.583
iolC_1
pfkB carbohydrate kinase family protein.
  
  
 0.567
DM82_5617
Short chain dehydrogenase family protein.
       0.508
iolD
Thiamine pyrophosphate enzyme, central domain protein; Belongs to the TPP enzyme family.
  
  
 0.487
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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