STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yobA_2copC domain protein. (125 aa)    
Predicted Functional Partners:
DM82_2028
Hypothetical protein.
  
    0.810
DM82_566
Hypothetical protein.
       0.797
efeN
Dyp-type peroxidase family protein; Involved in the recovery of exogenous heme iron. Extracts iron from heme while preserving the tetrapyrrol ring intact. Belongs to the DyP-type peroxidase family.
 
  
 0.617
yfeX
Dyp_perox_fam: Dyp-type peroxidase family protein.
  
  
 0.546
DM82_4690
pepSY-associated TM helix family protein.
  
    0.507
DM82_5639
Flavodoxin family protein.
  
    0.507
copA_1
ATPase-IB1_Cu: copper-translocating P-type ATPase.
     
 0.439
acpA
acid_phos_Burk: acid phosphatase, Burkholderia-type family protein.
  
     0.438
yebZ
Copper resistance D family protein.
 
  
 0.434
fccB_2
FAD dependent oxidoreductase family protein.
    
   0.422
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.