Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DM82_5660Mll9387 protein. (280 aa)    
Predicted Functional Partners:
DM82_5659
Hypothetical protein; Belongs to the UPF0261 family.
  
 0.999
DM82_5661
Polyketide cyclase / dehydrase and lipid transport family protein.
 
  
 0.991
DM82_5658
Bacterial regulatory s, tetR family protein.
 
   
 0.869
lgrD_1
NRPS-para261: non-ribosomal peptide synthase TIGR01720 domain protein.
  
  
 0.527
tycC_2
AA-adenyl-dom: amino acid adenylation domain protein.
  
  
 0.527
DM82_6361
AMP-binding enzyme family protein.
  
  
 0.525
dhbF_1
AA-adenyl-dom: amino acid adenylation domain protein.
  
  
 0.519
dltA
D-ala-DACP-lig: D-alanine--poly(phosphoribitol) ligase, subunit 1.
  
  
 0.519
dhbF_3
Thioesterase domain protein.
  
  
 0.519
wapA_2
Rhs_assc_core: RHS repeat-associated core domain protein.
   
    0.465
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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