STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM82_5723Hypothetical protein; Bacterial shufflon, N-terminal constant region family protein. (561 aa)    
Predicted Functional Partners:
epsE_3
Type II/IV secretion system family protein.
  
 
 0.815
epsF_2
Type II secretion system (T2SS), F family protein.
  
  
 0.811
DM82_5724
pilM family protein.
       0.788
DM82_3171
Putative general secretion pathway protein J.
  
 
 0.785
DM82_3172
Type II secretion system (T2SS), K family protein.
  
 
 0.764
DM82_5725
pilS N terminal family protein.
       0.669
bfpB
pilus_B_mal_scr: type IVB pilus formation outer membrane protein, R64 PilN family.
  
  
 0.635
DM82_5729
Pilin accessory family protein.
     
 0.631
DM82_1878
comEC_Rec2: DNA internalization-related competence protein ComEC/Rec2.
  
  
 0.614
epsE_1
Type II/IV secretion system family protein.
  
 
 0.584
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.