Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
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experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
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[Homology]
Score
Patl_0010KEGG: son:SO0016 DNA-3-methyladenine glycosidase I; TIGRFAM: DNA-3-methyladenine glycosylase I; PFAM: methyladenine glycosylase. (190 aa)    
Predicted Functional Partners:
Patl_3876
methylated-DNA--protein-cysteine methyltransferase; Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction: the enzyme is irreversibly inactivated.
   
 0.748
glyS
KEGG: pha:PSHAa0006 glycyl-tRNA synthetase subunit beta.
       0.613
glyQ
PFAM: glycyl-tRNA synthetase, alpha subunit; KEGG: cps:CPS_0005 glycyl-tRNA synthetase, alpha subunit.
       0.613
pepQ
Xaa-Pro dipeptidase, Metallo peptidase, MEROPS family M24B; Splits dipeptides with a prolyl residue in the C-terminal position.
      
 0.564
Patl_3875
PFAM: helix-turn-helix, AraC type Ada, metal-binding AlkA-like; KEGG: vpa:VPA0045 ada regulatory protein.
 
   
 0.534
Patl_0007
KEGG: hch:HCH_00343 hypothetical protein.
       0.466
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
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