STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Patl_0059KEGG: cps:CPS_0951 hypothetical protein. (393 aa)    
Predicted Functional Partners:
Patl_0058
KEGG: noc:Noc_1149 hypothetical protein.
 
    0.951
Patl_0060
TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein EAL; KEGG: cps:CPS_0952 GGDEF/EAL domain protein.
       0.777
Patl_1204
KEGG: cps:CPS_4396 hypothetical protein.
 
     0.768
Patl_1822
PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: cps:CPS_0977 TonB-dependent receptor.
  
 
   0.616
Patl_1601
Periplasmic sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase-like histidine kinase, HAMP region histidine kinase A-like; KEGG: sbo:SBO_2584 putative 2-component sensor protein.
  
     0.594
Patl_3382
PFAM: major facilitator superfamily MFS_1; KEGG: bsu:BG13075 glucose/mannose:H+ symporter.
  
     0.577
Patl_0984
PFAM: Kelch repeat; KEGG: cps:CPS_3966 kelch motif domain protein.
  
     0.542
Patl_3808
Hypothetical protein; KEGG: neu:NE0588 phage integrase:chain length determinant protein.
  
     0.536
Patl_0436
KEGG: tbd:Tbd_0773 hypothetical protein.
  
     0.517
Patl_0402
Lysine decarboxylase transcriptional regulator, CadC; PFAM: transcriptional regulatory protein-like; KEGG: son:SO1699 transcriptional regulator.
  
   
 0.515
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.