STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Patl_0126PFAM: glycoside hydrolase, family 85; KEGG: bha:BH0785 endo-beta-N-acetylglucosaminidase. (586 aa)    
Predicted Functional Partners:
cutC
CutC; Participates in the control of copper homeostasis. Belongs to the CutC family.
 
     0.892
Patl_0123
PFAM: coagulation factor 5/8 type-like; KEGG: sma:SAV2252 putative ATP/GTP-binding protein.
 
     0.861
Patl_0128
Beta-mannosidase; PFAM: glycoside hydrolase family 2, immunoglobulin-like beta-sandwich glycoside hydrolase family 2, sugar binding; KEGG: bfr:BF1733 beta-mannosidase.
 
     0.826
Patl_0125
Asparaginase; KEGG: xcb:XC_1195 asparaginase; TIGRFAM: Twin-arginine translocation pathway signal; PFAM: peptidase T2, asparaginase 2.
 
     0.820
Patl_0129
PFAM: Na+/solute symporter; KEGG: bth:BT3029 Na+/glucose symporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
 
    0.696
Patl_0124
PFAM: ATPase, BadF/BadG/BcrA/BcrD type; KEGG: cps:CPS_1026 BadF/BadG/BcrA/BcrD ATPase family protein.
 
     0.694
Patl_0130
TIGRFAM: putative alpha-1,2-mannosidase; PFAM: glycosyl hydrolase 92; KEGG: bth:BT3773 hypothetical protein.
 
     0.670
Patl_1501
PFAM: PKD domain containing protein peptidase-like; KEGG: ade:Adeh_2204 PKD.
  
   
 0.660
Patl_1545
Hypothetical protein.
  
     0.499
Patl_4010
KEGG: cef:CE0378 hypothetical protein.
  
     0.466
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
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