STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Patl_0149PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: ccr:CC3461 TonB-dependent receptor. (802 aa)    
Predicted Functional Partners:
Patl_1691
PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: ccr:CC3194 TonB-dependent receptor.
  
    0.760
Patl_0967
PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: pha:PSHAa0840 TonB-dependent receptor.
  
    0.595
Patl_2847
Hypothetical protein; KEGG: hch:HCH_01348 integral membrane protein.
  
     0.548
Patl_2986
Outer membrane transport energization protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
 
   0.523
Patl_1064
Outer membrane transport energization protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
 
   0.517
Patl_1738
Hypothetical protein; KEGG: eli:ELI_11880 FMN oxidoreductase.
 
     0.506
Patl_3539
Outer membrane transport energization protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
 
   0.492
Patl_4165
PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: xcv:XCV2894 TonB-dependent outer membrane receptor.
  
    0.471
Patl_3441
PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: pha:PSHAa1271 TonB-dependent receptor.
  
    0.468
Patl_1474
KEGG: hma:rrnAC0761 hypothetical protein.
  
     0.462
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
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