STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Patl_0152Deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific); PFAM: DNA photolyase, FAD-binding DNA photolyase-like; KEGG: ilo:IL0122 deoxyribodipyrimidine photolyase. (445 aa)    
Predicted Functional Partners:
Patl_0151
Deoxyribodipyrimidine photo-lyase family protein (cryptochrome); PFAM: DNA photolyase, FAD-binding; KEGG: vch:VC1392 deoxyribodipyrimidine photolyase, putative.
 
    
0.929
Patl_2797
PFAM: deoxyribodipyrimidine photolyase-related protein; KEGG: pmm:PMM0425 hypothetical protein.
 
   
 0.867
Patl_2108
KEGG: aci:ACIAD2972 hypothetical protein.
 
     0.632
Patl_0153
PFAM: aldehyde dehydrogenase; KEGG: reu:Reut_A1459 aldehyde dehydrogenase (NAD+); Belongs to the aldehyde dehydrogenase family.
       0.483
Patl_0154
PFAM: AMP-dependent synthetase and ligase; KEGG: son:SO1971 AMP-binding family protein.
       0.480
Patl_4061
KEGG: cps:CPS_0516 oxidoreductase, short-chain dehydrogenase/reductase family.
  
     0.463
Patl_4062
PFAM: putative thiol-disulphide oxidoreductase DCC; KEGG: ilo:IL2053 potential redox protein.
 
     0.460
Patl_0155
PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: nar:Saro_2601 TonB-dependent receptor.
       0.439
Patl_2349
KEGG: noc:Noc_2695 hypothetical protein.
  
     0.427
Patl_1395
Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
  
   0.407
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
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