STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Patl_0157KEGG: nar:Saro_1688 amine dehydrogenase; TIGRFAM: Twin-arginine translocation pathway signal; PFAM: Methylamine dehydrogenase light chain, C terminal; Belongs to the aromatic amine dehydrogenase light chain family. (185 aa)    
Predicted Functional Partners:
Patl_0160
KEGG: nar:Saro_1685 amine dehydrogenase.
 
 
  0.998
Patl_0158
PFAM: Redoxin; KEGG: nar:Saro_1687 hypothetical protein.
 
     0.946
Patl_0159
KEGG: reu:Reut_B4079 hypothetical protein.
 
     0.944
Patl_0156
KEGG: nar:Saro_1690 cytochrome c, class I.
 
     0.941
Patl_0850
Glutathione-independent formaldehyde dehydrogenase; PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: cps:CPS_4039 putative glutathione-independent formaldehyde dehydrogenase.
     
  0.900
Patl_0816
TIGRFAM: Twin-arginine translocation pathway signal; KEGG: rba:RB9882 similar to peptidylglycine monooxygenase.
   
   0.802
Patl_1859
TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; KEGG: cps:CPS_1892 hypothetical protein.
   
   0.802
Patl_1962
Peptidylglycine monooxygenase-like protein; KEGG: rba:RB9882 similar to peptidylglycine monooxygenase.
   
   0.802
Patl_0257
KEGG: pha:PSHAa0455 hypothetical protein.
   
   0.798
Patl_0642
KEGG: cps:CPS_2784 hypothetical protein.
   
   0.798
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.