STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Patl_0180Prepilin-type cleavage/methylation; PFAM: methylation; KEGG: cps:CPS_4566 putative MSHA biogenesis protein MshO. (280 aa)    
Predicted Functional Partners:
Patl_0179
TIGRFAM: Prepilin-type cleavage/methylation-like; KEGG: pha:PSHAa2687 mannose-sensitive agglutinin (MSHA) biogenesis protein MshD (pilus type IV).
 
     0.966
Patl_0178
Prepilin-type cleavage/methylation; PFAM: methylation; KEGG: cps:CPS_4568 MSHA pilin protein MshC.
 
     0.962
Patl_0181
KEGG: ilo:IL0378 type II secretory pathway component.
 
   
 0.950
Patl_0182
PFAM: CUB; KEGG: hch:HCH_06140 hypothetical protein.
 
     0.947
Patl_0177
Prepilin-type cleavage/methylation; PFAM: methylation; KEGG: pha:PSHAa2689 mannose-sensitive agglutinin (MSHA) biogenesis protein MshA (pilus type IV).
 
     0.903
Patl_0168
KEGG: son:SO4114 MSHA biogenesis protein MshJ.
 
   
 0.879
Patl_0167
Hypothetical protein; KEGG: vvu:VV11433 MSHA biogenesis protein MshI.
 
  
 0.875
Patl_0170
TIGRFAM: pilus (MSHA type) biogenesis protein MshL; PFAM: type II and III secretion system protein Secretin-like Secretin/TonB, short N-terminal; KEGG: cps:CPS_4576 MSHA biogenesis protein MshL.
 
  
 0.874
Patl_0176
Prepilin-type cleavage/methylation; PFAM: methylation; KEGG: ilo:IL0373 pilin protein.
 
   
 0.874
Patl_0172
Hypothetical protein; KEGG: ilo:IL0369 membrane associated TPR repeats containing protein.
 
     0.868
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
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