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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
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second shell of interactors
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proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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[Homology]
Score
Patl_0200PFAM: Lytic transglycosylase, catalytic; KEGG: cps:CPS_0011 putative soluble lytic murein transglycosylase. (637 aa)    
Predicted Functional Partners:
pepQ
Xaa-Pro dipeptidase, Metallo peptidase, MEROPS family M24B; Splits dipeptides with a prolyl residue in the C-terminal position.
 
     0.778
Patl_3975
N-acetylmuramoyl-L-alanine amidase; PFAM: Peptidoglycan-binding LysM cell wall hydrolase/autolysin; KEGG: pha:PSHAa0268 N-acetylmuramoyl-L-alanine amidase II.
 
 
 0.763
fadA
3-ketoacyl-CoA thiolase; Catalyzes the final step of fatty acid oxidation in which acetyl-CoA is released and the CoA ester of a fatty acid two carbons shorter is formed.
       0.663
lptD
Organic solvent tolerance protein; Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane.
  
  
 0.502
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
     
 0.491
Patl_3092
KEGG: pha:PSHAa0777 flagellar biosynthesis; TIGRFAM: flagellar rod assembly protein/muramidase FlgJ; PFAM: Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase; SMART: Lysozyme subfamily 2.
     
 0.475
Patl_0201
3-hydroxyacyl-CoA dehydrogenase; Involved in the aerobic and anaerobic degradation of long- chain fatty acids via beta-oxidation cycle. Catalyzes the formation of 3-oxoacyl-CoA from enoyl-CoA via L-3-hydroxyacyl-CoA. It can also use D-3-hydroxyacyl-CoA and cis-3-enoyl-CoA as substrate. In the C-terminal section; belongs to the 3-hydroxyacyl-CoA dehydrogenase family.
       0.470
nnrD
Carbohydrate kinase, YjeF related protein; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow t [...]
       0.463
Patl_3095
TIGRFAM: flagellar basal-body rod protein FlgG; PFAM: flagellar basal body rod protein protein of unknown function DUF1078-like; KEGG: cps:CPS_1482 flagellar basal-body rod protein FlgG; Belongs to the flagella basal body rod proteins family.
  
 
 0.429
Patl_1643
KEGG: cps:CPS_2564 hypothetical protein.
  
     0.408
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
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