STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Patl_0203PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: bfs:BF2697 putative exported TonB-dependent receptor protein. (700 aa)    
Predicted Functional Partners:
Patl_1468
PFAM: Endonuclease/exonuclease/phosphatase; KEGG: bba:Bd1711 hypothetical protein.
  
     0.586
Patl_3870
Hypothetical protein.
  
     0.552
Patl_3808
Hypothetical protein; KEGG: neu:NE0588 phage integrase:chain length determinant protein.
  
     0.541
Patl_2984
KEGG: mag:amb2868 hypothetical protein.
  
     0.515
Patl_3068
PFAM: Capsule polysaccharide biosynthesis; KEGG: tcx:Tcr_1514 capsule polysaccharide biosynthesis.
  
     0.486
Patl_3650
PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: cps:CPS_3737 TonB-dependent receptor.
  
     0.485
Patl_2982
KEGG: pha:PSHAa0525 hypothetical protein.
  
     0.475
Patl_0289
PFAM: Na+/solute symporter; KEGG: vpa:VPA0087 putative transporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
  
     0.473
Patl_0886
PFAM: Ig-like, group 2; KEGG: cac:CAC3086 protein containing cell adhesion domain.
  
     0.457
Patl_1429
KEGG: pha:PSHAa1664 hypothetical protein.
  
     0.435
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.