STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Patl_0217Periplasmic sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase-like histidine kinase, HAMP region histidine kinase A-like; KEGG: cps:CPS_0650 sensor histidine kinase. (499 aa)    
Predicted Functional Partners:
Patl_0218
Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver transcriptional regulatory protein-like; KEGG: cps:CPS_0651 DNA-binding response regulator.
 
 
 0.982
Patl_0219
KEGG: cps:CPS_0652 hypothetical protein.
 
 
   0.922
Patl_0220
KEGG: cps:CPS_0653 hypothetical protein.
 
 
   0.921
Patl_3411
Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver transcriptional regulatory protein-like; KEGG: pfo:Pfl_4221 two component transcriptional regulator, winged helix family.
 
 
 0.784
Patl_0987
Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver transcriptional regulatory protein-like; KEGG: pha:PSHAa0375 transcriptional regulator.
 
 0.781
Patl_1527
Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver transcriptional regulatory protein-like; KEGG: yps:YPTB2818 two-component system response regulator.
 
 
 0.767
Patl_1295
KEGG: rba:RB641 sensory histidine protein kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver GAF ATP-binding region, ATPase-like histidine kinase A-like PAS fold-3 PAS fold-4 PAS fold; SMART: PAS PAC motif.
 
0.754
Patl_1053
Two component transcriptional regulator, winged helix family; TIGRFAM: phosphate regulon transcriptional regulatory protein PhoB; PFAM: response regulator receiver transcriptional regulatory protein-like; KEGG: vfi:VF1988 phosphate regulon transcriptional regulatory protein PhoB.
 
 0.753
Patl_3571
Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver transcriptional regulatory protein-like; KEGG: cps:CPS_3172 DNA-binding response regulator.
 
 
 0.748
Patl_2301
Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver transcriptional regulatory protein-like; KEGG: ngo:NGO0177 putative two-component system transcriptional response regulator.
 
 
 0.747
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.