STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Patl_0230TIGRFAM: general secretion pathway protein C; KEGG: cps:CPS_4592 general secretion pathway protein C. (284 aa)    
Predicted Functional Partners:
Patl_0231
TIGRFAM: general secretion pathway protein D; PFAM: type II and III secretion system protein NolW-like; KEGG: cps:CPS_4591 general secretion pathway protein D.
 
 
 0.997
Patl_0236
TIGRFAM: general secretion pathway protein I; PFAM: type II secretion system protein I/J methylation; KEGG: cps:CPS_4586 general secretion pathway protein I.
 
  
 0.979
Patl_0237
TIGRFAM: general secretion pathway protein J; PFAM: methylation; KEGG: cps:CPS_4585 general secretion pathway protein J.
 
  
 0.974
Patl_0238
PFAM: General secretion pathway protein K; KEGG: son:SO0173 general secretion pathway protein K.
 
  
 0.968
Patl_0234
TIGRFAM: general secretion pathway protein G; PFAM: methylation type II secretion system protein G; KEGG: eca:ECA3106 general secretion pathway protein G.
 
  
 0.967
Patl_0241
PFAM: type II secretion system protein N; KEGG: pha:PSHAa0242 general secretion pathway protein N.
 
   
 0.963
Patl_0239
General secretion pathway protein L; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
   
 0.960
Patl_0240
General secretion pathway M protein; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
   
 0.952
Patl_0233
TIGRFAM: general secretion pathway protein F; PFAM: type II secretion system protein; KEGG: ppr:PBPRA3479 putative general secretion pathway protein F.
 
  
 0.948
Patl_0235
TIGRFAM: general secretion pathway protein H; PFAM: methylation; KEGG: cps:CPS_4587 general secretion pathway protein H.
 
  
 0.939
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.