STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Patl_0255KEGG: hch:HCH_01423 hypothetical protein. (282 aa)    
Predicted Functional Partners:
Patl_0254
PFAM: globin; KEGG: hch:HCH_01422 truncated hemoglobin.
 
     0.976
Patl_0257
KEGG: pha:PSHAa0455 hypothetical protein.
 
     0.974
Patl_0256
TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein EAL histidine kinase, HAMP region; KEGG: hch:HCH_01424 predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain.
 
     0.922
Patl_3361
KEGG: psp:PSPPH_3940 hypothetical protein.
 
     0.756
Patl_0943
KEGG: hch:HCH_01288 hypothetical protein.
  
     0.537
Patl_3751
PFAM: DSBA oxidoreductase; KEGG: psp:PSPPH_3908 2-hydroxychromene-2-carboxylate isomerase family protein.
  
  
 0.472
Patl_0179
TIGRFAM: Prepilin-type cleavage/methylation-like; KEGG: pha:PSHAa2687 mannose-sensitive agglutinin (MSHA) biogenesis protein MshD (pilus type IV).
  
     0.469
Patl_0622
KEGG: cvi:CV2486 hypothetical protein.
  
    0.457
Patl_2935
KEGG: pha:PSHAb0355 putative acyl-CoA thioesterase, TesB family.
 
     0.441
Patl_0166
KEGG: son:SO4114.2 hypothetical biogenesis protein MshI.
  
     0.436
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.