STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Patl_0260PFAM: surface antigen (D15); KEGG: pha:PSHAa1983 outer membrane protein. (579 aa)    
Predicted Functional Partners:
Patl_0261
PFAM: protein of unknown function DUF490; KEGG: vvu:VV10711 hypothetical protein.
 
 
 0.998
Patl_2136
KEGG: pha:PSHAa2329 hypothetical protein; signal peptide.
  
 
 0.880
bamA
Surface antigen (D15); Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
 
   
 0.585
Patl_1552
PFAM: peptidyl-prolyl cis-trans isomerase, cyclophilin type; KEGG: cps:CPS_4968 peptidyl-prolyl cis-trans isomerase, cyclophilin-type.
       0.578
lptD
Organic solvent tolerance protein; Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane.
  
   
 0.510
Patl_0259
PFAM: MscS Mechanosensitive ion channel; KEGG: pha:PSHAa0358 hypothetical protein.
       0.503
Patl_0262
MgtE intracellular region; PFAM: CBS domain containing protein MgtE integral membrane region MgtE intracellular region; KEGG: pha:PSHAa0712 magnesium transporter.
       0.432
Patl_1669
PFAM: cytochrome c assembly protein; KEGG: vpa:VP2535 hypothetical protein.
  
     0.416
Patl_1793
Phosphomannomutase; PFAM: phosphoglucomutase/phosphomannomutase C terminal phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: sec:SC2105 phosphomannomutase in colanic acid gene cluster.
  
    0.409
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
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