STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Patl_0331PFAM: protein of unknown function DUF839; KEGG: ccr:CC1375 hypothetical protein. (461 aa)    
Predicted Functional Partners:
Patl_1199
Hypothetical protein.
  
     0.556
Patl_1176
Hypothetical protein.
  
     0.544
Patl_1196
KEGG: nar:Saro_1349 hypothetical protein.
  
     0.527
Patl_3305
KEGG: ccr:CC1285 hypothetical protein.
  
     0.492
Patl_0330
Hypothetical protein.
       0.485
Patl_1216
PFAM: Alkaline phosphatase; KEGG: cps:CPS_1963 alkaline phosphatase; Belongs to the alkaline phosphatase family.
  
  
 0.431
Patl_2225
PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: ccr:CC2660 TonB-dependent receptor.
  
     0.418
Patl_1198
PFAM: glycosyl transferase, family 2; KEGG: pfo:Pfl_2017 glycosyl transferase, family 2.
  
     0.417
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.