STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Patl_0359Transcriptional regulator, LuxR family; PFAM: regulatory protein, LuxR Autoinducer-binding; KEGG: nmu:Nmul_A2417 transcriptional regulator, LuxR family. (248 aa)    
Predicted Functional Partners:
Patl_0361
PFAM: autoinducer synthesis protein; KEGG: vfi:VFA0924 LuxI, autoinducer synthesis protein.
  
 0.976
Patl_0761
PFAM: regulatory protein, LuxR; KEGG: mlo:mll4526 transcriptional regulatory.
  
 
 0.941
Patl_1495
PFAM: beta-lactamase-like; KEGG: cps:CPS_1284 metallo-beta-lactamase family protein.
    
 
 0.791
Patl_1204
KEGG: cps:CPS_4396 hypothetical protein.
  
  
 0.714
Patl_0357
KEGG: gvi:glr0437 unknown protein.
 
     0.537
Patl_0358
PFAM: ABC transporter related; SMART: ATPase; KEGG: sru:SRU_0147 ABC transporter ATP-binding protein.
       0.476
Patl_3102
PFAM: response regulator receiver CheW-like protein; KEGG: pha:PSHAa0766 chemotaxis protein.
   
  
 0.411
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.