STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Patl_0396PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: pha:PSHAb0232 putative TonB dependent receptor. (799 aa)    
Predicted Functional Partners:
Patl_0395
Pyridine nucleotide-disulfide oxidoreductase dimerization region; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase glucose-inhibited division protein A pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: ilo:IL1160 mercuric reductase, membrane-associated; Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family.
 
     0.787
Patl_4095
KEGG: pha:PSHAa1701 hypothetical protein.
  
     0.763
Patl_3645
KEGG: pha:PSHAa0571 alginate lyase.
  
 
   0.721
Patl_2728
KEGG: cps:CPS_2637 hypothetical protein.
  
     0.718
Patl_0413
KEGG: pha:PSHAb0233 hypothetical protein.
  
     0.713
Patl_3639
KEGG: pha:PSHAa0571 alginate lyase.
  
 
   0.680
Patl_0388
KEGG: pha:PSHAa2209 hypothetical protein.
  
     0.663
Patl_0394
KEGG: ilo:IL1167 hypothetical protein.
 
     0.621
Patl_0309
KEGG: pha:PSHAa1603 hypothetical protein.
  
     0.620
Patl_1364
PFAM: Hpt; KEGG: pha:PSHAa2621 sensory box sensor histidine kinase/response regulator.
  
     0.598
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.