STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Patl_0409PFAM: regulatory proteins, AsnC/Lrp; KEGG: ccr:CC2887 transcriptional regulator, AsnC family. (155 aa)    
Predicted Functional Partners:
Patl_3465
PFAM: regulatory proteins, AsnC/Lrp; KEGG: mlo:mlr8310 transcriptional regulator.
  
     0.768
Patl_0162
Transcriptional regulator, AsnC family; PFAM: regulatory proteins, AsnC/Lrp Helix-turn-helix, type 11; KEGG: pha:PSHAb0429 putative transcriptional regulator, AsnC family.
  
     0.582
Patl_0410
Tryptophan 2,3-dioxygenase apoenzyme / Tryptophan 2,3-dioxygenase holoenzyme; KEGG: plu:plu1434 hypothetical protein.
       0.527
Patl_3748
PFAM: glutamine amidotransferase, class-II glutamate synthase, alpha subunit-like ferredoxin-dependent glutamate synthase glutamate synthase; KEGG: vch:VC2376 glutamate synthase, large subunit.
     
 0.438
Patl_0411
PFAM: aminotransferase, class V; KEGG: pha:PSHAa0055 pyridoxal phosphate dependent enzyme.
       0.405
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.