STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Patl_0425PFAM: iron-containing alcohol dehydrogenase; KEGG: atc:AGR_pAT_199 hypothetical protein. (386 aa)    
Predicted Functional Partners:
Patl_1426
PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: ilo:IL1440 Zn-dependent alcohol dehydrogenase.
  
 0.951
Patl_2391
PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: syn:slr1192 zinc-containing alcohol dehydrogenase family.
  
 0.951
Patl_1438
PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: pha:PSHAa2213 alcohol dehydrogenase class III (glutathione-dependent formaldehyde dehydrogenase)(FDH) (FALDH); Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily.
    
 0.935
Patl_1829
PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: nmu:Nmul_A2272 zinc-containing alcohol dehydrogenase superfamily; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily.
    
 0.935
Patl_1481
PFAM: iron-containing alcohol dehydrogenase; KEGG: ilo:IL0796 alcohol dehydrogenase.
  
  
 
0.920
Patl_1874
PFAM: aldehyde dehydrogenase; KEGG: cps:CPS_1885 aldehyde dehydrogenase family protein; Belongs to the aldehyde dehydrogenase family.
 
 0.915
Patl_3760
PFAM: aldehyde dehydrogenase; KEGG: eba:ebA3161 P-hydroxybenzaldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
 0.915
Patl_1855
PFAM: Pyrrolo-quinoline quinone; KEGG: cps:CPS_1887 quinoprotein alcohol dehydrogenase.
     
 0.904
Patl_1720
TIGRFAM: Twin-arginine translocation pathway signal; PFAM: amine oxidase; KEGG: par:Psyc_1152 flavin monoamine oxidase related protein.
     
  0.900
Patl_1915
PFAM: alpha/beta hydrolase fold; KEGG: ccr:CC1175 haloalkane dehalogenase, putative.
     
 0.900
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
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