STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Patl_0430TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: son:SO3904 outer membrane protein TolC. (436 aa)    
Predicted Functional Partners:
Patl_1036
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD; KEGG: ilo:IL2305 HlyD family secretion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.953
Patl_3799
TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: yps:YPTB0492 multidrug efflux protein, RND family.
  
 0.949
Patl_2229
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: biotin/lipoyl attachment secretion protein HlyD; KEGG: son:SO1925 HlyD family secretion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.947
Patl_3800
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD; KEGG: gsu:GSU2697 multidrug resistance protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.947
Patl_1037
PFAM: acriflavin resistance protein; KEGG: ilo:IL2304 RND family efflux transporter; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 0.939
Patl_3599
TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: hch:HCH_04133 outer membrane protein.
     
 0.907
Patl_3798
TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: yps:YPTB0493 probable outer membrane multidrug efflux lipoprotein, OMF family.
     
0.907
Patl_0432
PFAM: protein of unknown function DUF1249; KEGG: yps:YPTB3398 hypothetical protein.
       0.769
cpdA
Metallophosphoesterase; Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes.
       0.759
Patl_0434
PFAM: protein of unknown function UPF0227; KEGG: vpa:VP0429 hypothetical protein.
       0.756
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
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