STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Patl_0462PFAM: beta-lactamase-like; KEGG: ilo:IL0617 Zn-dependent hydrolase, glyoxylase family. (292 aa)    
Predicted Functional Partners:
Patl_0461
PFAM: protein of unknown function DUF1653; KEGG: psp:PSPPH_3208 hypothetical protein.
       0.560
Patl_3926
PFAM: Carboxymuconolactone decarboxylase; KEGG: rba:RB8432 probable fusion protein.
 
     0.546
Patl_2303
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: bbr:BB1107 ferredoxin reductase.
   
 0.511
Patl_2761
PFAM: Carboxymuconolactone decarboxylase; KEGG: rba:RB8432 probable fusion protein.
 
     0.457
Patl_1386
Transcriptional regulator, XRE family; PFAM: helix-turn-helix motif; KEGG: cps:CPS_2176 hypothetical protein.
  
    0.418
Patl_0536
KEGG: ilo:IL0583 Oar-like outer membrane protein protein, OmpA family.
  
     0.404
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.