STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Patl_0484KEGG: vch:VC2456 hypothetical protein. (422 aa)    
Predicted Functional Partners:
Patl_0483
KEGG: xac:XAC3767 hypothetical protein.
 
    0.951
Patl_2582
KEGG: eba:ebB54 hypothetical protein.
 
    0.792
Patl_0132
KEGG: xac:XAC3767 hypothetical protein.
 
    0.781
Patl_4113
KEGG: eba:ebB54 hypothetical protein.
 
    0.771
Patl_4111
KEGG: vvy:VV2825 hypothetical protein.
 
    0.761
Patl_4107
KEGG: vch:VC2455 hypothetical protein.
 
    0.759
Patl_4109
KEGG: eba:ebB54 hypothetical protein.
 
    0.749
Patl_1176
Hypothetical protein.
  
     0.612
Patl_0482
PFAM: Paraquat-inducible protein A; KEGG: son:SO4710 hypothetical protein.
       0.608
Patl_1199
Hypothetical protein.
  
     0.604
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.