STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Patl_0502PFAM: peptidylprolyl isomerase, FKBP-type; KEGG: cvi:CV0705 probable FkbP-type peptidyl-prolyl cis-trans isomerase. (139 aa)    
Predicted Functional Partners:
Patl_3423
Bis(5'nucleosyl)-tetraphosphatase, ApaH; KEGG: hit:NTHI0679 bis-tetraphosphatase, symmetrical; TIGRFAM: bis(5'-nucleosyl)-tetraphosphatase (symmetrical); PFAM: metallophosphoesterase.
    
 0.838
htpG
Heat shock protein Hsp90; Molecular chaperone. Has ATPase activity.
   
 0.830
Patl_0607
PFAM: FKBP-type peptidyl-prolyl isomerase-like peptidylprolyl isomerase, FKBP-type; KEGG: pha:PSHAa1414 FKBP-type 22KD peptidyl-prolyl cis-trans isomerase (rotamase).
 
    
0.674
infA
Bacterial translation initiation factor 1 (bIF-1); One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex.
   
   0.653
Patl_0543
Hypothetical protein; KEGG: hsa:1834 dentin sialophosphoprotein.
   
 
 0.620
Patl_0965
Putative signal transduction protein with EFhand domain; PFAM: Calcium-binding EF-hand; KEGG: ath:At2g17890 calcium-dependent protein kinase family protein / CDPK family protein.
   
 
 0.620
Patl_1600
KEGG: xcb:XC_3869 hypothetical protein.
   
 
 0.620
Patl_2165
Hypothetical protein.
   
 
 0.620
kdkA
Lipopolysaccharide kinase; Catalyzes the ATP-dependent phosphorylation of the 3-deoxy-D- manno-octulosonic acid (Kdo) residue in Kdo-lipid IV(A) at the 4-OH position; Belongs to the protein kinase superfamily. KdkA/RfaP family.
    
 0.608
Patl_0503
KEGG: nar:Saro_0460 hypothetical protein.
       0.526
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.