STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Patl_0505KEGG: hch:HCH_04317 PPE-repeat protein. (891 aa)    
Predicted Functional Partners:
Patl_0504
Hypothetical protein.
       0.773
Patl_2460
DNA translocase FtsK; PFAM: cell divisionFtsK/SpoIIIE; KEGG: cps:CPS_2759 cell division protein FtsK.
    
 
 0.518
Patl_4029
Putative CheA signal transduction histidine kinase; KEGG: pha:PSHAa0251 hypothetical protein.
  
 
 
 0.485
Patl_0290
PFAM: oxidoreductase-like; KEGG: bcl:ABC0577 oxidoreductase.
  
     0.466
Patl_3279
Amino acid ABC transporter substrate-binding protein, PAAT family; KEGG: hch:HCH_01476 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain; TC 3.A.1.3.-.
  
     0.462
Patl_3362
AAA ATPase containing von Willebrand factor type A (vWA) domain-like protein; KEGG: pha:PSHAa2076 hypothetical protein; membrane protein.
 
 
 
 0.458
Patl_1526
KEGG: hch:HCH_05761 hypothetical protein.
  
     0.433
Patl_1924
Amino acid ABC transporter substrate-binding protein, PAAT family; KEGG: dvu:DVU0852 extracellular solute-binding protein, putative; TC 3.A.1.3.-.
  
     0.432
Patl_4166
Hypothetical protein.
  
     0.422
Patl_0714
KEGG: hch:HCH_00380 uncharacterized phage Mu protein GP47-like protein.
 
 
   0.416
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.