STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Patl_0513PFAM: peptidase M23B Opacity-associated protein A Opacity-associated protein A-like; KEGG: ilo:IL2237 peptidase, M23/M37 family. (439 aa)    
Predicted Functional Partners:
tyrS
tyrosyl-tRNA synthetase; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr); Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 2 subfamily.
       0.780
Patl_3863
Peptidase M23B; PFAM: Peptidoglycan-binding LysM peptidase M23B; KEGG: cps:CPS_1078 putative lipoprotein NlpD.
 
   
 0.761
Patl_1689
PFAM: peptidase M23B; KEGG: lic:LIC10721 hypothetical protein.
  
   
 0.662
Patl_0296
KEGG: vvu:VV10717 hypothetical protein.
  
  
 0.660
Patl_3975
N-acetylmuramoyl-L-alanine amidase; PFAM: Peptidoglycan-binding LysM cell wall hydrolase/autolysin; KEGG: pha:PSHAa0268 N-acetylmuramoyl-L-alanine amidase II.
 
  
 0.636
Patl_0723
TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase, family 51 penicillin-binding protein, transpeptidase; KEGG: vpa:VP2751 penicillin-binding protein 1A.
  
   
 0.557
Patl_1256
Site-2 protease, Metallo peptidase, MEROPS family M50B; KEGG: cps:CPS_1560 membrane-associated zinc metalloprotease EcfE; TIGRFAM: putative membrane-associated zinc metalloprotease; PFAM: peptidase M50; SMART: PDZ/DHR/GLGF.
 
  
 0.501
Patl_1894
PFAM: Peptidoglycan-binding LysM Lytic transglycosylase, catalytic; KEGG: cps:CPS_1998 putative membrane-bound lytic murein transglycosylase.
 
  
 0.497
rlpA
Rare lipoprotein A; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides.
  
 
 
 0.484
Patl_4171
PFAM: NLP/P60; KEGG: xcb:XC_3878 hypothetical protein.
  
  
 0.450
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
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