STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Patl_0536KEGG: ilo:IL0583 Oar-like outer membrane protein protein, OmpA family. (1008 aa)    
Predicted Functional Partners:
Patl_3471
PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: pha:PSHAb0254 putative outer membrane TonB-dependent receptor.
  
    0.721
Patl_1980
PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: pha:PSHAa2947 TonB-dependent receptor.
  
    0.709
Patl_0537
PFAM: Endonuclease/exonuclease/phosphatase; KEGG: cps:CPS_1964 endonuclease/exonuclease/phosphatase family protein.
 
     0.648
Patl_2180
PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: pha:PSHAb0299 putative TonB-dependent outer membrane receptor.
  
     0.613
Patl_2443
KEGG: pha:PSHAa2889 secreted protein.
  
     0.598
Patl_0244
PFAM: S1/P1 nuclease; KEGG: pha:PSHAb0342 putative S1/P1 nuclease.
       0.578
Patl_1059
PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: ccr:CC1970 TonB-dependent receptor.
  
    0.548
Patl_1723
PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: ccr:CC1093 TonB-dependent receptor, putative.
  
     0.514
Patl_1520
PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: ilo:IL1415 outer membrane protein.
  
     0.511
Patl_2904
PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: cps:CPS_3760 TonB-dependent receptor.
  
     0.500
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.