STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Patl_0545Hypothetical protein; KEGG: ilo:IL2241 uncharacterized conserved membrane or secreted protein. (232 aa)    
Predicted Functional Partners:
Patl_3377
KEGG: son:SO2179 hypothetical protein.
  
     0.582
Patl_2488
KEGG: pha:PSHAa1906 hypothetical protein.
  
     0.581
erpA
Iron-sulfur cluster assembly accessory protein; Required for insertion of 4Fe-4S clusters for at least IspG.
  
    0.580
Patl_0546
PFAM: Cl- channel, voltage gated; KEGG: pha:PSHAa2252 voltage-gated ClC-type chloride channel ClcA.
       0.566
Patl_0547
PFAM: conserved hypothetical protein 701; KEGG: ilo:IL2243 hypothetical protein.
       0.524
Patl_3187
KEGG: ilo:IL0852 hypothetical protein.
  
     0.462
Patl_3512
PFAM: peptidase M23B; KEGG: cps:CPS_4455 M23/M37 peptidase domain protein.
  
     0.461
Patl_0506
KEGG: son:SO1658 hypothetical protein.
  
     0.458
Patl_0166
KEGG: son:SO4114.2 hypothetical biogenesis protein MshI.
  
     0.456
Patl_1724
KEGG: ilo:IL1521 hypothetical protein.
  
     0.449
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.