STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Patl_0619PFAM: acriflavin resistance protein; KEGG: cps:CPS_4620 AcrB/AcrD/AcrF family protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. (1045 aa)    
Predicted Functional Partners:
Patl_0618
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD; KEGG: cps:CPS_4621 efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
   0.984
Patl_2229
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: biotin/lipoyl attachment secretion protein HlyD; KEGG: son:SO1925 HlyD family secretion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
   0.501
Patl_0620
PFAM: glutathione S-transferase-like; KEGG: pha:PSHAa2489 glutathione S-transferase enzyme with thioredoxin-like domain.
  
    0.476
Patl_2871
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD; KEGG: vpa:VPA0807 putative multidrug resistance protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
   0.476
Patl_2870
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD; KEGG: vpa:VPA0808 putative periplasmic linker protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
   0.472
Patl_2234
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD; KEGG: cps:CPS_0746 efflux transporter, MFP subunit, AcrA/E family; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
   0.467
Patl_1036
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD; KEGG: ilo:IL2305 HlyD family secretion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
   0.466
Patl_0621
PFAM: protein of unknown function DUF1244; KEGG: ppu:PP4633 hypothetical protein.
       0.417
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
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