STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Patl_0628Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH GntR-like; KEGG: son:SO2852 transcriptional regulator, GntR family. (213 aa)    
Predicted Functional Partners:
Patl_0629
TIGRFAM: benzoate transporter; PFAM: Benzoate membrane transport protein; KEGG: xac:XAC4292 benzoate transporter.
       0.773
Patl_2549
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH GntR-like; KEGG: bld:BLi01972 hypothetical protein.
  
     0.766
Patl_3532
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH GntR-like; KEGG: ccr:CC0783 transcriptional regulator, GntR family.
  
  
 0.698
Patl_3660
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH GntR-like; KEGG: pha:PSHAa1739 regulatory protein, GntR.
  
  
 0.629
Patl_0901
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH GntR-like; KEGG: mlo:mll7194 transcriptional regulator.
  
  
 0.606
Patl_0894
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH GntR-like; KEGG: mlo:mll7194 transcriptional regulator.
  
  
 0.595
Patl_0630
PFAM: Bile acid:sodium symporter; KEGG: syn:sll1428 P3 protein.
       0.520
Patl_0627
TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein EAL; KEGG: cps:CPS_1138 GGDEF/EAL domain protein.
       0.497
Patl_3349
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH GntR-like; KEGG: son:SO0423 pyruvate dehydrogenase complex repressor.
  
  
 0.485
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.