STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Patl_0632PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ilo:IL1485 short chain dehydrogenase family protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (249 aa)    
Predicted Functional Partners:
Patl_0633
PFAM: Phosphoglycerate mutase; KEGG: aci:ACIAD1884 putative phosphoglycerate mutase related protein.
 
     0.862
Patl_0634
PFAM: aminoglycoside phosphotransferase; KEGG: ilo:IL1486 predicted aminoglycoside phosphotransferase.
 
    0.750
Patl_3157
PFAM: MaoC-like dehydratase; KEGG: son:SO0559 MaoC domain protein.
 
   
 0.732
Patl_0635
PFAM: acyl-CoA dehydrogenase-like Acyl-CoA dehydrogenase, type 2-like; KEGG: ilo:IL1487 acyl-CoA dehydrogenase.
 
    0.645
Patl_0636
Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: reu:Reut_A1003 regulatory protein, LysR:LysR, substrate-binding; Belongs to the LysR transcriptional regulatory family.
 
     0.619
Patl_4031
PFAM: regulatory protein, TetR; KEGG: stm:STM4127 putative transcriptional repressor.
  
     0.555
Patl_0631
Amino acid ABC transporter substrate-binding protein, PAAT family; KEGG: mag:amb2748 hypothetical protein; TC 3.A.1.3.-.
       0.528
nadA
Quinolinate synthetase A; Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate; Belongs to the quinolinate synthase A family. Type 1 subfamily.
   
    0.527
Patl_2935
KEGG: pha:PSHAb0355 putative acyl-CoA thioesterase, TesB family.
  
     0.482
Patl_1811
PFAM: Phosphoglycerate mutase; KEGG: bur:Bcep18194_B3039 phosphoglycerate/bisphosphoglycerate mutase.
 
     0.474
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
Server load: low (34%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.