STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Patl_0669PFAM: Pilus assembly protein, PilO; KEGG: cps:CPS_0469 type IV pilus biogenesis protein PilO. (203 aa)    
Predicted Functional Partners:
Patl_0668
PFAM: Pilus assembly protein, PilQ; KEGG: cps:CPS_0470 type IV pilus biogenesis protein PilP.
 
 
 0.998
Patl_0670
PFAM: Fimbrial assembly; KEGG: pha:PSHAa2719 type IV pilus biogenesis protein PilN.
 
 
 0.998
Patl_0667
TIGRFAM: type IV pilus secretin PilQ; PFAM: type II and III secretion system protein NolW-like Secretin/TonB, short N-terminal; KEGG: son:SO0285 type IV pilus biogenesis protein PilQ.
 
 
 0.995
Patl_0671
TIGRFAM: type IV pilus assembly protein PilM; KEGG: pha:PSHAa2720 type IV pilus biogenesis protein PilM.
 
 
 0.995
Patl_0024
PFAM: Peptidoglycan-binding LysM; KEGG: pha:PSHAa0024 hypothetical protein.
 
 
   0.924
Patl_0167
Hypothetical protein; KEGG: vvu:VV11433 MSHA biogenesis protein MshI.
  
 
 0.853
Patl_3170
Prepilin-type cleavage/methylation; PFAM: methylation; KEGG: noc:Noc_2275 general secretion pathway protein H.
 
   
 0.793
Patl_3168
Prepilin-type cleavage/methylation; PFAM: methylation; KEGG: tbd:Tbd_1865 pilus assembly protein.
 
   
 0.770
aroK
Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.
       0.748
Patl_3128
KEGG: son:SO3314 fimbrial biogenesis and twitching motility protein, putative; TIGRFAM: type IV pilus biogenesis/stability protein PilW; PFAM: TPR repeat Peptidoglycan-binding LysM Tetratricopeptide TPR_2; SMART: Tetratricopeptide region.
  
   
 0.743
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
Server load: low (10%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.