STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Patl_0684Hypothetical protein. (169 aa)    
Predicted Functional Partners:
Patl_0685
Hypothetical protein.
       0.773
Patl_0686
KEGG: bce:BC1874 phage protein.
       0.773
Patl_0687
KEGG: tde:TDE1153 hypothetical protein.
       0.773
Patl_0688
PFAM: bacteriophage replication gene A; KEGG: spt:SPA2623 putative phage gene.
       0.773
Patl_0683
Hypothetical protein.
       0.605
Patl_0681
Hypothetical protein.
       0.593
Patl_0682
PFAM: DNA methylase N-4/N-6; KEGG: vch:VCA0447 hemagglutinin associated protein.
       0.593
Patl_0680
Phage transcriptional regulator, AlpA; PFAM: Prophage CP4-57 regulatory.
       0.451
Patl_0679
KEGG: son:SO2988 hypothetical protein.
       0.440
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.