STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Patl_0761PFAM: regulatory protein, LuxR; KEGG: mlo:mll4526 transcriptional regulatory. (881 aa)    
Predicted Functional Partners:
Patl_3543
Hpt sensor hybrid histidine kinase; PFAM: response regulator receiver ATP-binding region, ATPase-like histidine kinase A-like Hpt Two component regulator propeller Two component regulator three Y; KEGG: cps:CPS_0755 GGDEF domain protein.
   
 
 0.976
Patl_3747
KEGG: vch:VC2369 sensor histidine kinase FexB; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver ATP-binding region, ATPase-like histidine kinase A-like Hpt PAS fold-3 PAS fold-4 PAS fold; SMART: PAS PAC motif.
   
 
 0.955
Patl_0359
Transcriptional regulator, LuxR family; PFAM: regulatory protein, LuxR Autoinducer-binding; KEGG: nmu:Nmul_A2417 transcriptional regulator, LuxR family.
  
 
 0.941
Patl_0507
Multi-sensor hybrid histidine kinase; PFAM: response regulator receiver ATP-binding region, ATPase-like histidine kinase A-like Hpt Diverse 7TM receptor, transmembrane region; KEGG: son:SO3457 sensor histidine kinase/response regulator.
   
 
 0.924
Patl_4293
Multi-sensor hybrid histidine kinase; PFAM: response regulator receiver ATP-binding region, ATPase-like histidine kinase A-like Hpt Diverse 7TM receptor, transmembrane region; KEGG: cps:CPS_4481 sensor histidine kinase/response regulator.
   
 
 0.924
Patl_2664
GAF sensor hybrid histidine kinase; PFAM: response regulator receiver GAF ATP-binding region, ATPase-like histidine kinase A-like PAS fold-3; SMART: PAC motif; KEGG: dar:Daro_1614 PAS.
  
 
 0.920
Patl_3604
PAS/PAC sensor hybrid histidine kinase; KEGG: hch:HCH_00794 FOG: PAS/PAC domain; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver ATP-binding region, ATPase-like histidine kinase A-like PAS fold-3 PAS fold-4 PAS fold; SMART: PAS PAC motif.
   
 
 0.896
Patl_4152
Histidine kinase; PFAM: response regulator receiver ATP-binding region, ATPase-like histidine kinase A-like; KEGG: pha:PSHAa2394 two-component sensor histidine kinase and response regulator hybrid.
   
 
 0.886
Patl_2818
Periplasmic sensor hybrid histidine kinase; PFAM: response regulator receiver ATP-binding region, ATPase-like histidine kinase A-like; KEGG: vch:VC1349 sensory box sensor histidine kinase/response regulator.
  
 
 0.838
Patl_3914
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein diguanylate cyclase; PFAM: conserved hypothetical protein EAL; KEGG: noc:Noc_0226 PAS sensor diguanylate cyclase and phophodiesterase.
  
  
 0.733
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.