STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Patl_0768PFAM: sulfotransferase TPR repeat; SMART: Tetratricopeptide region; KEGG: eli:ELI_00455 TPR domain protein. (663 aa)    
Predicted Functional Partners:
Patl_0767
PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: eli:ELI_00460 TonB-dependent receptor.
 
     0.868
Patl_1810
PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: ccr:CC0991 TonB-dependent receptor.
  
     0.452
Patl_3795
PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: nar:Saro_2541 TonB-dependent receptor.
  
     0.446
Patl_4271
KEGG: pha:PSHAb0058 putative orphan protein.
  
     0.418
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.