Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Patl_0804PFAM: glycoside hydrolase family 2, immunoglobulin-like beta-sandwich glycoside hydrolase family 2, TIM barrel glycoside hydrolase family 2, sugar binding; KEGG: xcv:XCV4356 beta-galactosidase; Belongs to the glycosyl hydrolase 2 family. (858 aa)    
Predicted Functional Partners:
Patl_0805
PFAM: glycoside hydrolase, family 16; KEGG: pfo:Pfl_2825 glycoside hydrolase, family 16.
 
  
  0.873
Patl_0810
PFAM: Carbohydrate binding family 6 glycoside hydrolase, family 43; SMART: Cellulose binding, type IV; KEGG: bth:BT1781 xylosidase/arabinosidase; Belongs to the glycosyl hydrolase 43 family.
 
  
  0.779
Patl_0842
Alpha-L-arabinofuranosidase; PFAM: glycoside hydrolase, family 43; KEGG: bcl:ABC1148 xylosidase/arabinosidase; Belongs to the glycosyl hydrolase 43 family.
 
  
  0.779
Patl_2144
Beta-galactosidase; PFAM: Glycoside hydrolase, family 42-like Beta-galactosidase trimerisation; KEGG: tma:TM1195 beta-galactosidase.
 
 
 0.761
Patl_0823
Alpha-L-fucosidase; PFAM: glycoside hydrolase, family 29 (alpha-L-fucosidase); KEGG: rba:RB5816 alpha-L-fucosidase.
 
   
 0.755
Patl_0831
Alpha-L-fucosidase; PFAM: glycoside hydrolase, family 29 (alpha-L-fucosidase); KEGG: rba:RB5816 alpha-L-fucosidase.
 
   
 0.752
Patl_0825
Beta-glucosidase; PFAM: glycoside hydrolase, family 3-like; KEGG: bfs:BF0758 putative glycosyl hydrolase.
 
   
 0.717
Patl_0910
PFAM: protein of unknown function DUF1680; KEGG: rba:RB5313 conserved hypothetical protein-putative ATP binding protein.
 
     0.687
Patl_3728
Alpha-L-arabinofuranosidase; PFAM: glycoside hydrolase, family 43; KEGG: xcb:XC_4214 xylosidase/arabinosidase; Belongs to the glycosyl hydrolase 43 family.
 
  
  0.666
Patl_2657
Endo-1,4-beta-xylanase; PFAM: glycoside hydrolase, family 10; KEGG: xcb:XC_4207 endo-1,4-beta-xylanase A.
  
  
  0.634
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
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