STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Patl_0809PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: cps:CPS_2359 TonB-dependent receptor. (1218 aa)    
Predicted Functional Partners:
Patl_0806
Hypothetical protein.
 
     0.846
Patl_0807
PFAM: tryptophan halogenase; KEGG: pha:PSHAa1353 tryptophan halogenase.
 
     0.769
Patl_2642
Agarase; KEGG: sco:SCO3487 hydrolase.
  
     0.757
Patl_1904
Agarase; KEGG: rba:RB3421 probable beta-agarase [precursor].
  
     0.756
Patl_0911
KEGG: bba:Bd0328 rhs family protein.
  
     0.754
Patl_0880
PFAM: glycoside hydrolase, family 16; KEGG: rba:RB3123 probable glycosyl hydrolases-putative kappa-carrageenase precursor.
 
     0.750
Patl_1971
Agarase; KEGG: sco:SCO3487 hydrolase.
  
     0.749
Patl_2640
Agarase; KEGG: sco:SCO3487 hydrolase.
  
     0.749
Patl_2341
Agarase; PFAM: Ig-like, group 2; KEGG: rba:RB3421 probable beta-agarase [precursor].
  
     0.747
Patl_0777
TIGRFAM: Twin-arginine translocation pathway signal; KEGG: rba:RB1828 hypothetical protein-signal peptide and transmembrane prediction.
  
     0.740
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.