STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Patl_0819PFAM: sulfatase; KEGG: bth:BT3333 arylsulfatase A precursor (ASA). (523 aa)    
Predicted Functional Partners:
Patl_3687
PFAM: glycoside hydrolase, clan GH-D; KEGG: eli:ELI_03515 alpha-galactosidase.
     
  0.900
Patl_0821
PFAM: glycoside hydrolase, family 42, domain 5, loop region glycoside hydrolase family 2, immunoglobulin-like beta-sandwich glycoside hydrolase family 2, TIM barrel glycoside hydrolase family 2, sugar binding; KEGG: tma:TM1193 beta-galactosidase.
 
   0.824
Patl_0820
PFAM: sulfatase; KEGG: rba:RB198 N-acetylgalactosamine-4-sulfatase precursor.
 
    
0.816
Patl_0892
PFAM: fumarate reductase/succinate dehydrogenase flavoprotein-like; KEGG: bth:BT2458 putative pyridine nucleotide-disulphide oxidoreductase.
  
     0.672
Patl_0822
KEGG: xoo:XOO0340 hypothetical protein.
 
    0.618
Patl_0823
Alpha-L-fucosidase; PFAM: glycoside hydrolase, family 29 (alpha-L-fucosidase); KEGG: rba:RB5816 alpha-L-fucosidase.
 
     0.501
Patl_0814
TIGRFAM: Twin-arginine translocation pathway signal; PFAM: protein of unknown function DUF1501; KEGG: rba:RB9886 hypothetical protein-putative related to sulfatases.
  
     0.442
Patl_0824
PFAM: glycoside hydrolase, family 16; KEGG: sco:SCO3471 extracellular agarase precursor.
 
     0.428
Patl_0815
PFAM: Planctomycete cytochrome C protein of unknown function DUF1549; KEGG: rba:RB7229 hypothetical protein-signal peptide and transmembrane prediction.
  
     0.427
Patl_0804
PFAM: glycoside hydrolase family 2, immunoglobulin-like beta-sandwich glycoside hydrolase family 2, TIM barrel glycoside hydrolase family 2, sugar binding; KEGG: xcv:XCV4356 beta-galactosidase; Belongs to the glycosyl hydrolase 2 family.
   0.416
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.