STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Patl_0832PFAM: glycoside hydrolase family 2, immunoglobulin-like beta-sandwich glycoside hydrolase family 2, TIM barrel glycoside hydrolase family 2, sugar binding; KEGG: bth:BT0983 beta-galactosidase; Belongs to the glycosyl hydrolase 2 family. (979 aa)    
Predicted Functional Partners:
Patl_3687
PFAM: glycoside hydrolase, clan GH-D; KEGG: eli:ELI_03515 alpha-galactosidase.
 
 
 0.944
Patl_2682
Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer.
 
 
 0.928
Patl_3534
Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer.
 
 
 0.928
Patl_0833
KEGG: rba:RB13259 hypothetical protein.
 
  
 0.923
glk
Glucokinase; KEGG: yps:YPTB2700 glucokinase; TIGRFAM: glucokinase; PFAM: Glucokinase; Belongs to the bacterial glucokinase family.
     
 0.901
Patl_0831
Alpha-L-fucosidase; PFAM: glycoside hydrolase, family 29 (alpha-L-fucosidase); KEGG: rba:RB5816 alpha-L-fucosidase.
   
 0.821
xylA
D-xylose isomerase; KEGG: ppr:PBPRA0457 putative D-xylose isomerase; TIGRFAM: xylose isomerase; PFAM: Xylose isomerase-like TIM barrel; Belongs to the xylose isomerase family.
    
 0.811
Patl_0834
PFAM: Mannitol dehydrogenase-like Mannitol dehydrogenase rossman-like; KEGG: ccr:CC1487 mannitol 2-dehydrogenase.
     
 0.783
Patl_0823
Alpha-L-fucosidase; PFAM: glycoside hydrolase, family 29 (alpha-L-fucosidase); KEGG: rba:RB5816 alpha-L-fucosidase.
 
   
 0.761
Patl_2144
Beta-galactosidase; PFAM: Glycoside hydrolase, family 42-like Beta-galactosidase trimerisation; KEGG: tma:TM1195 beta-galactosidase.
 
 
 0.756
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
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