STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Patl_0843PFAM: glycoside hydrolase, family 16; KEGG: rba:RB3123 probable glycosyl hydrolases-putative kappa-carrageenase precursor. (284 aa)    
Predicted Functional Partners:
Patl_0839
PFAM: Ig-like, group 2; KEGG: rba:RB3421 probable beta-agarase [precursor].
  
   
 0.772
Patl_2341
Agarase; PFAM: Ig-like, group 2; KEGG: rba:RB3421 probable beta-agarase [precursor].
  
   
 0.771
Patl_1904
Agarase; KEGG: rba:RB3421 probable beta-agarase [precursor].
  
   
 0.740
Patl_0887
PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: cps:CPS_2359 TonB-dependent receptor.
  
     0.739
Patl_3638
PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: pha:PSHAa2457 TonB-dependent receptor.
  
     0.727
Patl_0809
PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: cps:CPS_2359 TonB-dependent receptor.
  
     0.722
Patl_0911
KEGG: bba:Bd0328 rhs family protein.
  
     0.717
Patl_1826
PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: cps:CPS_0238 TonB-dependent receptor.
  
     0.713
Patl_2976
Conserved hypothetical protein; TIGRFAM: Fibrobacter succinogenes major paralogous domain; KEGG: cte:CT0060 hypothetical protein.
 
     0.711
Patl_1966
PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: xac:XAC0144 TonB-dependent receptor.
  
     0.683
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.