STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Patl_0848PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sma:SAV565 putative 2,3-dihydroxybiphenyl-1,2-dioxygenase. (312 aa)    
Predicted Functional Partners:
Patl_0849
PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: sco:SCO6308 hydrolase.
     
 0.720
Patl_3772
PFAM: Phytanoyl-CoA dioxygenase; KEGG: nfa:nfa35020 hypothetical protein.
  
    0.713
Patl_0847
Aminocarboxymuconate-semialdehyde decarboxylase; PFAM: amidohydrolase 2; KEGG: sco:SCO6305 hypothetical protein.
 
   
 0.711
Patl_2624
PFAM: Rieske [2Fe-2S] region; KEGG: fra:Francci3_0190 Rieske (2Fe-2S) protein.
 
  
 0.593
Patl_0869
PFAM: ferredoxin oxidoreductase FAD/NAD(P)-binding Oxidoreductase FAD-binding region; KEGG: pfl:PFL_3472 vanillate O-demethylase oxidoreductase.
 
 
 
 0.581
Patl_1097
KEGG: sye:Syncc9902_0044 hypothetical protein.
  
     0.542
Patl_1189
Hypothetical protein.
  
     0.526
Patl_2327
DoxX; PFAM: DoxX; KEGG: cps:CPS_3329 hypothetical protein.
 
    0.524
Patl_0857
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bja:bll6427 hypothetical protein.
 
  
 0.518
Patl_0923
KEGG: pae:PA2095 hypothetical protein.
  
     0.509
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.