STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Patl_0866Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: ppu:PP3196 nodulation protein D1; Belongs to the LysR transcriptional regulatory family. (299 aa)    
Predicted Functional Partners:
Patl_0867
PFAM: Rieske [2Fe-2S] region; KEGG: rpb:RPB_1908 Rieske (2Fe-2S) protein.
 
     0.726
Patl_0856
KEGG: ppu:PP3195 hypothetical protein.
  
     0.638
Patl_0844
PFAM: Rieske [2Fe-2S] region; KEGG: pfl:PFL_3471 vanillate O-demethylase, oxygenase subunit.
  
     0.593
Patl_0852
PFAM: Rieske [2Fe-2S] region; KEGG: sco:SCO6680 oxidoreductase alpha subunit.
  
     0.593
Patl_0857
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bja:bll6427 hypothetical protein.
  
     0.583
Patl_0859
PFAM: monooxygenase, FAD-binding FAD dependent oxidoreductase; KEGG: bja:bll6425 hypothetical protein.
  
     0.579
Patl_0855
PFAM: putative cyclase; KEGG: ppu:PP3207 cyclase, putative.
  
     0.555
Patl_0869
PFAM: ferredoxin oxidoreductase FAD/NAD(P)-binding Oxidoreductase FAD-binding region; KEGG: pfl:PFL_3472 vanillate O-demethylase oxidoreductase.
 
   
 0.464
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
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