STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Patl_0870PFAM: sulfatase; KEGG: pfo:Pfl_0208 sulfatase. (534 aa)    
Predicted Functional Partners:
Patl_3772
PFAM: Phytanoyl-CoA dioxygenase; KEGG: nfa:nfa35020 hypothetical protein.
  
     0.478
Patl_0869
PFAM: ferredoxin oxidoreductase FAD/NAD(P)-binding Oxidoreductase FAD-binding region; KEGG: pfl:PFL_3472 vanillate O-demethylase oxidoreductase.
       0.440
Patl_1449
PFAM: Tetratricopeptide TPR_2; SMART: Tetratricopeptide region; KEGG: cps:CPS_2378 TPR domain protein.
  
     0.401
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.