STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Patl_0882KEGG: pha:PSHAb0050 hypothetical protein. (153 aa)    
Predicted Functional Partners:
Patl_1891
PFAM: protein of unknown function DUF1568; KEGG: pha:PSHAa1474 hypothetical protein.
 
     0.783
Patl_1892
KEGG: pha:PSHAb0050 hypothetical protein.
  
     0.774
Patl_2823
PFAM: protein of unknown function DUF1568; KEGG: son:SO4547 hypothetical protein.
 
     0.774
Patl_3757
KEGG: pha:PSHAa1585 hypothetical protein.
  
     0.773
Patl_3919
Periplasmic sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase-like histidine kinase, HAMP region histidine kinase A-like; KEGG: pha:PSHAa0627 sensor histidine kinase.
  
     0.408
Patl_0883
Hypothetical protein; KEGG: bld:BLi02834 YrhK.
       0.404
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.