STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Patl_0899PFAM: KDPG and KHG aldolase; KEGG: pfo:Pfl_4124 KDPG and KHG aldolase. (216 aa)    
Predicted Functional Partners:
Patl_0898
PFAM: 2-keto-3-deoxy-galactonokinase; KEGG: xcv:XCV1794 putative 2-oxo-3-deoxygalactonate kinase.
 
  
 0.986
Patl_3530
PFAM: 2-keto-3-deoxy-galactonokinase; KEGG: ccr:CC0785 2-dehydro-3-deoxygalactonokinase.
 
  
 0.967
Patl_0974
KEGG: sdy:SDY_1136 2-keto-3-deoxygluconate 6-phosphate aldolase/2-keto-4-hydroxyglutarate aldolase; TIGRFAM: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; PFAM: KDPG and KHG aldolase.
  
  
 
0.852
Patl_2643
PFAM: KDPG and KHG aldolase; KEGG: oih:OB2214 2-dehydro-3-deoxyphosphogluconate aldolase / 4-hydroxy-2-oxoglutarate aldolase.
  
  
 
0.851
Patl_2644
PfkB; PFAM: PfkB; KEGG: mta:Moth_0419 PfkB.
 
  
 0.781
Patl_0897
PFAM: Mandelate racemase/muconate lactonizing enzyme-like; KEGG: sil:SPO2414 mandelate racemase/muconate lactonizing enzyme family protein.
 
   
 0.734
Patl_0800
PFAM: D-galactarate dehydratase/Altronate hydrolase-like; KEGG: ccr:CC1488 altronate hydrolase.
 
  
 0.687
uxuA
D-mannonate dehydratase; Catalyzes the dehydration of D-mannonate.
 
   
 0.640
Patl_1969
PFAM: PfkB; KEGG: pha:PSHAa1745 ketodeoxygluconokinase.
 
  
 0.628
Patl_0836
PFAM: PfkB; KEGG: pha:PSHAa1745 ketodeoxygluconokinase.
 
  
 0.618
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
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