STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Patl_0910PFAM: protein of unknown function DUF1680; KEGG: rba:RB5313 conserved hypothetical protein-putative ATP binding protein. (665 aa)    
Predicted Functional Partners:
Patl_0823
Alpha-L-fucosidase; PFAM: glycoside hydrolase, family 29 (alpha-L-fucosidase); KEGG: rba:RB5816 alpha-L-fucosidase.
  
     0.760
Patl_0831
Alpha-L-fucosidase; PFAM: glycoside hydrolase, family 29 (alpha-L-fucosidase); KEGG: rba:RB5816 alpha-L-fucosidase.
  
     0.759
Patl_0832
PFAM: glycoside hydrolase family 2, immunoglobulin-like beta-sandwich glycoside hydrolase family 2, TIM barrel glycoside hydrolase family 2, sugar binding; KEGG: bth:BT0983 beta-galactosidase; Belongs to the glycosyl hydrolase 2 family.
 
     0.703
Patl_0804
PFAM: glycoside hydrolase family 2, immunoglobulin-like beta-sandwich glycoside hydrolase family 2, TIM barrel glycoside hydrolase family 2, sugar binding; KEGG: xcv:XCV4356 beta-galactosidase; Belongs to the glycosyl hydrolase 2 family.
 
     0.686
Patl_0833
KEGG: rba:RB13259 hypothetical protein.
 
     0.674
Patl_0812
KEGG: sco:SCO3481 hypothetical protein.
  
     0.652
Patl_0810
PFAM: Carbohydrate binding family 6 glycoside hydrolase, family 43; SMART: Cellulose binding, type IV; KEGG: bth:BT1781 xylosidase/arabinosidase; Belongs to the glycosyl hydrolase 43 family.
 
   
 0.646
Patl_0824
PFAM: glycoside hydrolase, family 16; KEGG: sco:SCO3471 extracellular agarase precursor.
  
     0.646
Patl_0892
PFAM: fumarate reductase/succinate dehydrogenase flavoprotein-like; KEGG: bth:BT2458 putative pyridine nucleotide-disulphide oxidoreductase.
  
     0.641
Patl_1968
Conserved hypothetical protein; PFAM: Glycosyl hydrolases family 32, N terminal; KEGG: sco:SCO3481 hypothetical protein; Belongs to the glycosyl hydrolase 43 family.
 
   
 0.631
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
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